GUÉGAN Jean-Francois's profile
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GUÉGAN Jean-Francois

  • Department of Animal Health/Department of Societies & Health, INRAE-IRD, Montpellier, France
  • Animal diseases, Coevolution, Disease Ecology/Evolution, Ecology of hosts, infectious agents, or vectors, Epidemiology, Geography of infectious diseases, Interactions between hosts and infectious agents/vectors, Microbiology of infections, Parasites, Population dynamics of hosts, infectious agents, or vectors, Reservoirs, Sapronoses, Zoonoses
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Recommendations:  2

Reviews:  0

Areas of expertise
Biodiversity-disease relationships Climate change-disease relationships Global environmental change and health Population dynamics of infectious diseases Advanced planetary health, Ecohealth, One Health approaches

Recommendations:  2

16 Jul 2024
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Diverse fox circovirus (Circovirus canine) variants circulate at high prevalence in grey wolves (Canis lupus) from the Northwest Territories, Canada

Wild canine viruses in the news. Better understanding multi-host transmission by adopting a disease ecology species community-based approach

Recommended by based on reviews by Arvind Varsani and 1 anonymous reviewer

According to the international animal health authority, i.e., the World Organization on Animal Health (WOAH, former OIE), circoviruses are part of the Circoviridae family, which only includes 2 genera Circovirus and Cyclovirus, and infect swine, canine, ursid, viverrid, felid, pinniped, herpestid, mustelid, and several avian species (WOAH 2021). They are small (12–27 nm), non-enveloped, circular, single-stranded DNA viruses, viral replication is nuclear, and wild and domestic birds and mammals could serve as natural hosts. If most infections caused by circoviruses are subclinical in both wild and domestic species, they can be responsible for severe diseases in the commercial pig industry due to the Porcine circovirus-2 (PCV-2). These viruses can constitute a threat to wildlife, and cause their hosts to become immunocompromised, and animals often present with secondary coinfections. 

Canine circoviruses (CanineCV) harbour a worldwide distribution in dogs, and is the sole member of the viral genus to infect canines. They can be detected in wild carnivores, such as wolves, badgers, foxes and jackals, which indicates an ability for cross-species transmission between wildlife and domestic dogs. However, fox circovirus (FoCV), a distinct lineage of CanineCV, has been identified exclusively in wild canids (foxes and wolves) and not in dogs in Europe and North America, where it can cause in red foxes meningoencephalitis and other central nervous system signs. 

In their article, Canuti et al. (2024) investigate the presence, distribution and ecology of CanineCV in grey wolf specimens from the Northwest Territories, Canada. CanineCV occurrence appears to be relatively high with 45.3% positive specimens and parvoviral superinfections observed. The authors identify a high CanineCV genetic diversity among the investigated grey wolf specimens, and exacerbated by viral recombination. Phylogenetic analysis reveals the existence of 4 lineages, within each of them strains segregate by geography and not by host origin. This observed geographic segregation is interpreted as being due to the absence of exchange flows between grey wolf host subpopulations.  Due to the paucity of knowledge on these circoviruses in wildlife and at the interface between wild and domestic animals, the authors discuss the plausible role of wolves as natural host reservoirs for disease transmission due to long-lasting virus-host coevolution. They are also conscious that additional maintenance hosts could exist in the wild, claiming for further studies to decipher fox circovirus disease ecology and transmission dynamics.

This study underlines the importance of better understanding the transmission ecology and evolution of these Canine circoviruses, and I can only agree. Xiao et al. (2023), a research not referred to in the present work, evidenced CanineCV infection in cats in China, and obtained the first whole genome of cat-derived CanineCV. This emphasizes the importance of monitoring additional animal species and locations in the world to clarify disease ecology and transmission dynamics. A broader sampling of a wide range of animal species in different parts of the world using a species community-based approach is the key to understanding these CanineCV infections.

References

Marta CANUTI, Abigail V.L. KING, Giovanni FRANZO, H. Dean CLUFF, Lars E. LARSEN, Heather FENTON, Suzanne C. DUFOUR, Andrew S. LANG. 2024. Diverse fox circovirus (Circovirus canine) variants circulate at high prevalence in grey wolves (Canis lupus) from the Northwest Territories, Canada. bioRxiv, ver. 2 peer-reviewed and recommended by Peer Community in Infections. https://doi.org/10.1101/2024.03.08.584028

World Organization on Animal Health. 2021. Circoviruses.  https://www.woah.org/app/uploads/2021/05/circoviruses-infection-with.pdf [consulted on July 9th, 2024].

Xiangyu XIAO, Yan CHAO LI, Feng PEI XU, Xiangpi HAO, Shoujun LI, Pei ZHOU. 2023. Canine circovirus among dogs and cats in China: first identification in cats. Front. Microbiol. 14. https://doi.org/10.3389/fmicb.2023.1252272

17 Jan 2024
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Assessing the dynamics of Mycobacterium bovis infection in three French badger populations

From disease surveillance to public action. Re-inforcing both epidemiological surveillance and data analysis: an illustration with Mycobacterium bovis

Recommended by based on reviews by Rowland Kao and 1 anonymous reviewer

Mycobacterium bovis, also called M. tuberculosis var. bovis, is a bacterium belonging to the M. tuberculosis complex (i.e., MTBC) and which can cause through zoonotic transmission another form of human tuberculosis (Tb). It is above all the agent of bovine tuberculosis (i.e., bTb) which affects not only cattle (wild or farmed) but also a large diversity of other wild mammals worldwide. An increasing number of infected animal cases are being discovered in many regions of the world, thus raising the problem of tuberculosis transmission, including to humans, more complex than previously thought. Efforts have been made in terms of vaccination or culling of populations of host carrier species, such as the badger for example, however leading to consequences of greater dispersion of the infectious agent. M. bovis shows a more or less significant capacity to persist outside its hosts, particularly in the environment under certain abiotic and biotic conditions. This bacillus can be transmitted and spread in many ways, including through aerosol, mucus and sputum, urine and feces, by direct contact with infected animals, their dead bodies or rather via their excreta or by inhalation of aerosols, depending on the host species concerned.

In this paper, Calenge and his collaborators (Callenge et al. 2024) benefited from a national surveillance program on M. bovis cases in wild species, set up in 2011 in France, i.e., Sylvatub, for detecting and monitoring M. bovis infection in European badger (Meles meles) populations. Sylvatub is a participatory program involving both national and local stakeholder systems in order to determine changes in bTb infection levels in domestic and wild animal species. This original work had two aims: to describe spatial disease dynamics in the three clusters under scrutiny using a complex Bayesian model; and to develop indicators for the monitoring of the M. bovis infection by stakeholders and decision-makers of the program. This paper is timely and very comprehensive.

In this cogent study, the authors illustrate this point by using epidemiological surveillance to obtain large amounts of data (which is generally lacking in human epidemiology, but more dramatically lacking in animal epidemiology) and a highly sophisticated biostatistical analysis (Callenge et al. 2024). It is in itself a demonstration of the current capabilities of population dynamics applied to infectious disease situations, in this case animal, in the rapidly developing discipline of disease ecology and evolution. One of the aims of the study is to propose statistical models that can be used by the different stakeholders in charge, for instance, of wildlife conservation or the regional or State veterinary services to assess disease risk in the most affected regions.

References

Assel AKHMETOVA​, Jimena GUERRERO​, Paul McADAM, Liliana CM SALVADOR​, Joseph CRISPELL​, John LAVERY​, Eleanor PRESHO​, Rowland R KAO​, Roman BIEK​, Fraser MENZIES​, Nigel TRIMBLE​, Roland HARWOOD​, P Theo PEPLER, Katarina ORAVCOVA​, Jordon GRAHAM​, Robin SKUCE​, Louis DU PLESSIS​, Suzan THOMPSON​, Lorraine WRIGHT​, Andrew W BYRNE​, Adrian R ALLEN. 2023. Genomic epidemiology of Mycobacterium bovis infection in sympatric badger and cattle populations in Northern Ireland. Microbial Genomics 9: mgen001023. https://doi.org/10.1099/mgen.0.001023

Roman BIEK, Anthony O’HARE, David WRIGHT, Tom MALLON, Carl McCORMICK, Richard J ORTON, Stanley McDOWELL, Hannah TREWBY, Robin A SKUCE, Rowland R KAO. 2012. Whole genome sequencing reveals local transmission patterns of Mycobacterium bovis in sympatric cattle and badger populations. PLoS Pathogens 8: e1003008. https://doi.org/10.1371/journal.ppat.1003008

Clément CALENGE, Ariane PAYNE, Edouard REVEILLAUD, Céline RICHOMME, Sébastien GIRARD, Stephanie DESVAUX. 2024. Assessing the dynamics of Mycobacterium bovis infection in three French badger populations. bioRxiv, ver. 3 peer-reviewed and recommended by Peer Community In Infections. https://doi.org/10.1101/2023.05.31.543041

Marc CHOISY, Pejman ROHANI. 2006. Harvesting can increase severity of wildlife disease epidemics. Proceedings of the Royal Society, London, Ser. B 273: 2025-2034. https://doi.org/10.1098/rspb.2006.3554

Shannon C DUFFY, Sreenidhi SRINIVASAN, Megan A SCHILLING, Tod STUBER, Sarah N DANCHUK, Joy S MICHAEL, Manigandan VENKATESAN, Nitish BANSAL, Sushila MAAN, Naresh JINDAL, Deepika CHAUDHARY, Premanshu DANDAPAT, Robab KATANI, Shubhada CHOTHE, Maroudam VEERASAMI, Suelee ROBBE-AUSTERMAN, Nicholas JULEFF, Vivek KAPUR, Marcel A BEHR. 2020. Reconsidering Mycobacterium bovis as a proxy for zoonotic tuberculosis: a molecular epidemiological surveillance study. Lancet Microbe 1: e66-e73. https://doi.org/10.1016/S2666-5247(20)30038-0

Jean-François GUEGAN. 2019. The nature of ecology of infectious disease. The Lancet Infectious Diseases 19. https://doi.org/10.1016/s1473-3099(19)30529-8

Brandon H HAYES, Timothée VERGNE, Mathieu ANDRAUD, Nicolas ROSE. 2023. Mathematical modeling at the livestock-wildlife interface: scoping review of drivers of disease transmission between species. Frontiers in Veterinary Science 10: 1225446. https://doi.org/10.3389/fvets.2023.1225446

David KING, Tim ROPER, Douglas YOUNG, Mark EJ WOOLHOUSE, Dan COLLINS, Paul WOOD. 2007. Bovine tuberculosis in cattle and badgers. Report to Secretary of State about tuberculosis in cattle and badgers. London, UK. https://www.bovinetb.info/docs/RBCT_david_%20king_report.pdf  

Robert MM SMITH , Francis DROBNIEWSKI, Andrea GIBSON, John DE MONTAGUE, Margaret N LOGAN, David HUNT, Glyn HEWINSON, Roland L SALMON, Brian O’NEILL. 2004. Mycobacterium bovis Infection, United Kingdom. Emerging Infectious Diseases 10: 539-541. https://doi.org/10.3201/eid1003.020819 

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GUÉGAN Jean-Francois

  • Department of Animal Health/Department of Societies & Health, INRAE-IRD, Montpellier, France
  • Animal diseases, Coevolution, Disease Ecology/Evolution, Ecology of hosts, infectious agents, or vectors, Epidemiology, Geography of infectious diseases, Interactions between hosts and infectious agents/vectors, Microbiology of infections, Parasites, Population dynamics of hosts, infectious agents, or vectors, Reservoirs, Sapronoses, Zoonoses
  • recommender

Recommendations:  2

Reviews:  0

Areas of expertise
Biodiversity-disease relationships Climate change-disease relationships Global environmental change and health Population dynamics of infectious diseases Advanced planetary health, Ecohealth, One Health approaches